PATRIC Data is Linked to Associated Biochemical Pathways

Our analysis tools and interactive visualizations allow users to highlight regions of genome loss or conservation and ultimately look for changes within the context of functional pathways. Pathways of interest can be identified using the Comparative Pathway Tool and then analyzed individually, or in selected sets, via the Comparative Pathway Heatmap and KEGG Map.

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Pathway Conservation Across %Genomes: 80 ~ 100 % 60 ~ 80 % 40 ~ 60 % 20 ~ 40 % < 20 %

Find and Analyze Pathways with PATRIC Tools

View Pathway Tutorials

  • Some species of Mycobacterium have been documented to be undergoing widespread gene loss as they adapt to an intracellular lifestyle.
 See how we use PATRIC to highlight regions of genome loss or conservation and ultimately look for changes within the context of functional pathways.

  • This downloadable pdf contains screenshots and detailed step-wise instructions for locating data of interest, such as finding a particular gene, finding the pan-proteome for all Mycobacterium genomes using the Protein Family Sorter and Heatmap, and examining pathways across Mycobacterium using the Comparative Pathway Tool and Heatmap.

  • See how to use PATRIC tables and the Table Toolbar including sorting, downloading, analysis tools, creating persistent column customization, and saving items to your workspace.

  • Data in PATRIC is organized in a similar fashion at various taxonomic levels throughout the website.  Follow along in this Mycobacterium example and see what data is available and where to find it for your favorite organisms/genomes/genes.

  • This downloadable pdf contains screenshots and detailed step-wise instructions for locating data of interest, such as finding a particular gene, finding the pan-proteome for all Brucella genomes using the Protein Family Sorter and Heatmap, and examining pathways across Brucella using the Comparative Pathway Tool and Heatmap.

  • Find out more about PATRIC data, analysis tools, and functionality in our Frequently Asked Questions.

How Do We Process and Clean Up Our Data?

How Do We Process and Clean Up Our Data?

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